This site contains collections of sequence motifs enriched in human bidirectional CAGE enhancers as described in Andersen et al. 2014, Nature. The underlying CAGE data was produced at the RIKEN OSC as part of the international FANTOM consortium and is described in Forrest et al. 2014, Nature.

Sequence motifs were extracted from enhancers or promoters (either all or those showing differential activity in primary cells or tissues) using HOMER, a suite of tools for motif discovery and next-gen sequencing analysis developed by Christopher Benner (Integrative Genomics Core, Salk Institute, San Diego).

Motif collections for complete enhancer/promoter sets

Motif collections for cell type-specific enhancer sets

Motif collections for tissue-specific enhancer sets