Detailed information for motif21

P-value:1e-53
ln P-value:-1.238e+02
Information content per bp:1.913
Number of target sequences with motif:3131.0
Percentage of target sequences with motif:18.75%
Number of background sequences with motif:4776.0
Percentage of background sequences with motif:  14.38%
Average position of motif in targets:269.7 +/- 325.1bp
Average position of motif in background:222.1 +/- 131.3bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.14
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0365.1_RFX1

Match rank:  1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCA
GGTTGCCA
  

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  2
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCA---
CTGTTGCTAGGS
  

RFX1_f1_HM09

Match rank:  3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GTTGCCA-----
GTTGCCAGGGAA
  

HIC1_si_HM09

Match rank:  4
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCA
GGGTTGCCC
  

PB0055.1_Rfx4_1

Match rank:  5
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCA-----
NNCGTTGCTATGGNN