Detailed information for motif20

P-value:1e-58
ln P-value:-1.345e+02
Information content per bp:1.890
Number of target sequences with motif:5348.0
Percentage of target sequences with motif:32.03%
Number of background sequences with motif:8768.6
Percentage of background sequences with motif:  26.40%
Average position of motif in targets:288.4 +/- 545.3bp
Average position of motif in background:227.8 +/- 129.6bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.24
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

TLX2.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GGTAAGT--
CGGTAAGTGG
  

SD0001.1_at_AC_acceptor

Match rank:  2
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GGTAAGT--
CAGGTAAGTAT
  

FOX{C1,C2}.p2.SwissRegulon.nucfreq

Match rank:  3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGTAAGT-
GGNAAGTA
  

SD0002.1_at_AC_acceptor

Match rank:  4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GGTAAGT--
AAGGCAAGTGT
  

NKX3-2.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GGTAAGT---
-NTAAGTGGN