Detailed information for motif2

P-value:1e-16
ln P-value:-3.739e+01
Information content per bp:1.821
Number of target sequences with motif:9.0
Percentage of target sequences with motif:11.84%
Number of background sequences with motif:44.9
Percentage of background sequences with motif:  0.09%
Average position of motif in targets:234.9 +/- 124.1bp
Average position of motif in background:193.8 +/- 128.2bp
Strand bias (log2 ratio + to - strand density):-0.3
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

ENCODE UW.Motif.0618

Match rank:  1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCAGAGGGGAGGCG
CCANTGNGNANNNG
  

ENCODE UW.Motif.0009

Match rank:  2
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CCAGAGGGGAGGCG
-----GGGGNGGGG
  

MAZ.p2.SwissRegulon.nucfreq

Match rank:  3
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CCAGAGGGGAGGCG
-----GGGGAGGG-
  

PATZ1.p2.SwissRegulon.nucfreq

Match rank:  4
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CCAGAGGGGAGGCG---
----GGGGGAGGGGCCN
  

MA0456.1_opa

Match rank:  5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCAGAGGGGAGGCG
-CAGCGGGGGGTC-