Detailed information for motif2

P-value:1e-17
ln P-value:-3.982e+01
Information content per bp:1.766
Number of target sequences with motif:25.0
Percentage of target sequences with motif:10.04%
Number of background sequences with motif:463.7
Percentage of background sequences with motif:  0.95%
Average position of motif in targets:169.8 +/- 85.1bp
Average position of motif in background:210.8 +/- 118.3bp
Strand bias (log2 ratio + to - strand density):-0.6
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

SRF.p3.SwissRegulon.nucfreq

Match rank:  1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CCWTATTTGG--
CCTTATTTGGGC
  

MF0008.1_MADS_class

Match rank:  2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CCWTATTTGG
CCATATATGG
  

CArG(MADS)/PUER-Srf-ChIP-Seq/Homer

Match rank:  3
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--CCWTATTTGG
TNCCATATATGG
  

PB0078.1_Srf_1

Match rank:  4
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--CCWTATTTGG--
TNCCATATATGGNA
  

SRF_MADS_DBD_DBD_MCCATATAWGGN_dimeric

Match rank:  5
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CCWTATTTGG-
GCCATATATGGT