Detailed information for motif12

P-value:1e-21
ln P-value:-4.975e+01
Information content per bp:1.587
Number of target sequences with motif:265.0
Percentage of target sequences with motif:24.38%
Number of background sequences with motif:6562.4
Percentage of background sequences with motif:  13.43%
Average position of motif in targets:196.5 +/- 104.4bp
Average position of motif in background:199.8 +/- 115.2bp
Strand bias (log2 ratio + to - strand density):-0.2
Multiplicity (# of sites on avg that occur together):  1.16
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match rank:  1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ACACGTCTG-
VBSYGTCTGG
  

XBP1_f1_HM09

Match rank:  2
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----ACACGTCTG
NAATGACACGTC--
  

XBP1.p3.SwissRegulon.nucfreq

Match rank:  3
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----ACACGTCTG
ANTGCCACGTC--
  

MA0259.1_HIF1A::ARNT

Match rank:  4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:ACACGTCTG
GCACGTNC-
  

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match rank:  5
Score:0.74
Offset:2
Orientation:forward strand
Alignment:ACACGTCTG-
--CTGTCTGG