Detailed information for motif1

P-value:1e-20
ln P-value:-4.823e+01
Information content per bp:1.828
Number of target sequences with motif:52.0
Percentage of target sequences with motif:33.12%
Number of background sequences with motif:3492.4
Percentage of background sequences with motif:  7.08%
Average position of motif in targets:187.2 +/- 63.2bp
Average position of motif in background:198.8 +/- 115.7bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.23
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

JUN_f1_HM09

Match rank:  1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:ATGACTCA-
NTGACTCAN
  

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq/Homer

Match rank:  2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:ATGACTCA--
ATGACTCATC
  

JUND_f1_HM09

Match rank:  3
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-ATGACTCA--
GATGACTCATC
  

SMRC1_f1_HM09

Match rank:  4
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:ATGACTCA-
NTGACTCAN
  

BATF_si_HM09

Match rank:  5
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-ATGACTCA-
NATGACTCAT