Detailed information for motif8

P-value:1e-32
ln P-value:-7.579e+01
Information content per bp:1.653
Number of target sequences with motif:56.0
Percentage of target sequences with motif:5.33%
Number of background sequences with motif:294.9
Percentage of background sequences with motif:  0.61%
Average position of motif in targets:184.2 +/- 69.6bp
Average position of motif in background:201.8 +/- 116.0bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCATGGHRAC--
CNGTTGCCATGGCGACNG
  

RFX3_f1_HM09

Match rank:  2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGHRAC
GGTTGCCATGGTAA-
  

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGHRAC
NGTTGCCATGGCAA-
  

RFX(HTH)/K562-RFX3-ChIP-Seq/Homer

Match rank:  4
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGHRAC
CGGTTGCCATGGCAAC
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  5
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGHRAC
GGTTGCCATGGCAA-