Detailed information for motif17

P-value:1e-20
ln P-value:-4.676e+01
Information content per bp:1.635
Number of target sequences with motif:82.0
Percentage of target sequences with motif:7.81%
Number of background sequences with motif:1109.3
Percentage of background sequences with motif:  2.30%
Average position of motif in targets:217.6 +/- 98.8bp
Average position of motif in background:193.0 +/- 114.6bp
Strand bias (log2 ratio + to - strand density):0.2
Multiplicity (# of sites on avg that occur together):  1.03
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX2_f1_HM09

Match rank:  1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTTAGMAA
TGTTGCTAGGGAA
  

RFX1_f1_HM09

Match rank:  2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTTGCTTAGMAA
GTTGCCAGGGAA
  

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCTTAGMAA
CTGTTGCTAGGS--
  

PB0056.1_Rfxdc2_1

Match rank:  4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTGCTTAGMAA----
-CCGCATAGCAACGGA
  

PB0055.1_Rfx4_1

Match rank:  5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTTAGMAA
NNCGTTGCTATGGNN