Detailed information for motif42

P-value:1e-15
ln P-value:-3.486e+01
Information content per bp:1.710
Number of target sequences with motif:144.0
Percentage of target sequences with motif:5.48%
Number of background sequences with motif:1219.0
Percentage of background sequences with motif:  2.63%
Average position of motif in targets:197.7 +/- 107.2bp
Average position of motif in background:196.8 +/- 118.5bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.06
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
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Motif logos

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Conservation across vertebrates

Matches to known motifs

FOXC2_f1_HM09

Match rank:  1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TGTTGTCTTAGT
GTTTGTTTTGCCAGA
  

FOXA2_f1_HM09

Match rank:  2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGTTGTCTTAGT
TTGTTTACTTAG-
  

MA0047.2_Foxa2

Match rank:  3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGTTGTCTTAGT
TGTTTACTTAGG
  

FOXA2.p3.SwissRegulon.nucfreq

Match rank:  4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGTTGTCTTAGT
TGTTTACTTAGN
  

MA0148.1_FOXA1

Match rank:  5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGTTGTCTTAGT
TGTTTACTTTG-