Detailed information for motif20

P-value:1e-26
ln P-value:-6.068e+01
Information content per bp:1.694
Number of target sequences with motif:775.0
Percentage of target sequences with motif:29.51%
Number of background sequences with motif:9577.0
Percentage of background sequences with motif:  20.65%
Average position of motif in targets:200.5 +/- 110.6bp
Average position of motif in background:198.9 +/- 122.2bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.18
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

GLI3_si_HM09

Match rank:  1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AVCCACSCA-
NGACCACCCAN
  

MA0359.1_RAP1

Match rank:  2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AVCCACSCA
CACCCATACA
  

AHR_ARNT_ARNT2.p2.SwissRegulon.nucfreq

Match rank:  3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AVCCACSCA
---CACGCA
  

MA0006.1_Arnt::Ahr

Match rank:  4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AVCCACSCA
---CACGCA
  

GLI1..3.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AVCCACSCA--
GGACCACCCAGN