Detailed information for motif13

P-value:1e-38
ln P-value:-8.892e+01
Information content per bp:1.722
Number of target sequences with motif:294.0
Percentage of target sequences with motif:11.20%
Number of background sequences with motif:2240.5
Percentage of background sequences with motif:  4.83%
Average position of motif in targets:202.1 +/- 91.0bp
Average position of motif in background:199.3 +/- 120.6bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.14
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CATRGTAAC--
SCCTAGCAACAG
  

PB0159.1_Rfx4_2

Match rank:  2
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CATRGTAAC---
TACCCTAGTTACCGA
  

PB0056.1_Rfxdc2_1

Match rank:  3
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CATRGTAAC---
CCGCATAGCAACGGA
  

PB0055.1_Rfx4_1

Match rank:  4
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CATRGTAAC---
TACCATAGCAACGGT
  

RFX3_f1_HM09

Match rank:  5
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----CATRGTAAC-
TTACCATGGCAACN