Detailed information for motif1

P-value:1e-18
ln P-value:-4.211e+01
Information content per bp:1.753
Number of target sequences with motif:22.0
Percentage of target sequences with motif:5.25%
Number of background sequences with motif:167.6
Percentage of background sequences with motif:  0.35%
Average position of motif in targets:190.5 +/- 60.2bp
Average position of motif in background:191.0 +/- 118.6bp
Strand bias (log2 ratio + to - strand density):0.5
Multiplicity (# of sites on avg that occur together):  1.09
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX(HTH)/K562-RFX3-ChIP-Seq/Homer

Match rank:  1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GTTGCCATGGCAAC--
GTTGCCATGGCAACCG
  

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  2
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:GTTGCCATGGCAAC-
-TTGCCATGGCAACN
  

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  3
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCATGGCAAC--
CNGTTGCCATGGCGACNG
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  4
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:GTTGCCATGGCAAC-
-TTGCCATGGCAACC
  

RFX3_f1_HM09

Match rank:  5
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAAC
GGTTGCCATGGTAA-