Detailed information for motif2

P-value:1e-15
ln P-value:-3.516e+01
Information content per bp:1.806
Number of target sequences with motif:50.0
Percentage of target sequences with motif:19.46%
Number of background sequences with motif:2529.8
Percentage of background sequences with motif:  5.15%
Average position of motif in targets:211.0 +/- 97.0bp
Average position of motif in background:196.1 +/- 119.5bp
Strand bias (log2 ratio + to - strand density):0.6
Multiplicity (# of sites on avg that occur together):  1.08
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

PB0134.1_Hnf4a_2

Match rank:  1
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----AAAGTCCAG---
GGCAAAAGTCCAATAA
  

HNF4G_f1_HM09

Match rank:  2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----AAAGTCCAG
GGCCAAAGTCCA-
  

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq/Homer

Match rank:  3
Score:0.75
Offset:-8
Orientation:forward strand
Alignment:--------AAAGTCCAG
CANAGNNCAAAGTCCA-
  

HNF4A_f1_HM09

Match rank:  4
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----AAAGTCCAG
AGGCCAAAGTCCA-
  

MA0459.1_tll

Match rank:  5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AAAGTCCAG
AAAAGTCAAA