Detailed information for motif25

P-value:1e-20
ln P-value:-4.743e+01
Information content per bp:1.890
Number of target sequences with motif:321.0
Percentage of target sequences with motif:16.98%
Number of background sequences with motif:4736.9
Percentage of background sequences with motif:  9.92%
Average position of motif in targets:199.3 +/- 102.6bp
Average position of motif in background:200.2 +/- 115.5bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.11
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0365.1_RFX1

Match rank:  1
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTA
GGTTGCCA
  

PB0055.1_Rfx4_1

Match rank:  2
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTA-----
NNCGTTGCTATGGNN
  

PB0056.1_Rfxdc2_1

Match rank:  3
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTA-----
NCCGTTGCTANGNGN
  

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  4
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCTA---
CTGTTGCTAGGS
  

PB0054.1_Rfx3_1

Match rank:  5
Score:0.87
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCTA---------
NTNNNNNGTTGCTANGGNNCANA