Detailed information for motif8

P-value:1e-15
ln P-value:-3.608e+01
Information content per bp:1.770
Number of target sequences with motif:32.0
Percentage of target sequences with motif:4.20%
Number of background sequences with motif:308.6
Percentage of background sequences with motif:  0.64%
Average position of motif in targets:177.8 +/- 124.3bp
Average position of motif in background:203.7 +/- 118.9bp
Strand bias (log2 ratio + to - strand density):0.8
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0077.1_SOX9

Match rank:  1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GAACAATAGCN
GAACAATGG--
  

SOX{8,9,10}.p2.SwissRegulon.nucfreq

Match rank:  2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GAACAATAGCN
GAACAATGG--
  

PB0183.1_Sry_2

Match rank:  3
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----GAACAATAGCN-
TCACGGAACAATAGGTG
  

PB0173.1_Sox21_2

Match rank:  4
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----GAACAATAGCN-
NNNNNGAACAATTGANN
  

PB0065.1_Sox15_1

Match rank:  5
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----GAACAATAGCN--
TAGTGAACAATAGATTT