Detailed information for motif40

P-value:1e-17
ln P-value:-3.934e+01
Information content per bp:1.706
Number of target sequences with motif:93.0
Percentage of target sequences with motif:3.37%
Number of background sequences with motif:565.5
Percentage of background sequences with motif:  1.20%
Average position of motif in targets:187.9 +/- 104.8bp
Average position of motif in background:200.9 +/- 118.9bp
Strand bias (log2 ratio + to - strand density):0.3
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RUNX3_si_HM09

Match rank:  1
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---GGTTTGTGGTTA
TGGGGTTTGTGGTT-
  

RUNX1_f1_HM09

Match rank:  2
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GGTTTGTGGTTA
--TTTGTGGTTA
  

RUNX1..3.p2.SwissRegulon.nucfreq

Match rank:  3
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GGTTTGTGGTTA
--TTTGTGGTT-
  

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer

Match rank:  4
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GGTTTGTGGTTA
--NNTGTGGTTT
  

MA0002.2_RUNX1

Match rank:  5
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GGTTTGTGGTTA
-GTCTGTGGTTT