Detailed information for motif20

P-value:1e-29
ln P-value:-6.712e+01
Information content per bp:1.644
Number of target sequences with motif:121.0
Percentage of target sequences with motif:4.38%
Number of background sequences with motif:604.8
Percentage of background sequences with motif:  1.29%
Average position of motif in targets:192.1 +/- 85.6bp
Average position of motif in background:194.6 +/- 109.6bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.04
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX(HTH)/K562-RFX3-ChIP-Seq/Homer

Match rank:  1
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGTAAC
CGGTTGCCATGGCAAC
  

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  2
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCATGGTAAC--
CNGTTGCCATGGCGACNG
  

RFX3_f1_HM09

Match rank:  3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGTAAC
GGTTGCCATGGTAA-
  

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  4
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGTAAC
NGTTGCCATGGCAA-
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  5
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGTAAC
GGTTGCCATGGCAA-