Detailed information for motif30

P-value:1e-20
ln P-value:-4.708e+01
Information content per bp:1.511
Number of target sequences with motif:225.0
Percentage of target sequences with motif:5.85%
Number of background sequences with motif:1336.2
Percentage of background sequences with motif:  2.95%
Average position of motif in targets:191.6 +/- 108.8bp
Average position of motif in background:200.4 +/- 121.6bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.02
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

NR1D1_f1_HM09

Match rank:  1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--WGACTCRTTT--
TNTGACCTACTTTT
  

MA0072.1_RORA_2

Match rank:  2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-WGACTCRTTT---
TTGACCTANTTATN
  

RORA_f1_HM09

Match rank:  3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:WGACTCRTTT--
TGACCTAGTTTT
  

RORG_f1_HM09

Match rank:  4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-WGACTCRTTT--
CTGACCTACTTTN
  

RORA.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-WGACTCRTTT---
CTGACCTANTTTTN