Detailed information for motif19

P-value:1e-18
ln P-value:-4.315e+01
Information content per bp:1.679
Number of target sequences with motif:685.0
Percentage of target sequences with motif:39.35%
Number of background sequences with motif:14019.5
Percentage of background sequences with motif:  29.29%
Average position of motif in targets:199.2 +/- 112.5bp
Average position of motif in background:200.8 +/- 117.7bp
Strand bias (log2 ratio + to - strand density):0.2
Multiplicity (# of sites on avg that occur together):  1.40
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

SMAD1..7,9.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGCTGGCTG------
GGCTGTCTGCCCNNC
  

SMAD2_si_HM09

Match rank:  2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGCTG
GTGTCCGTCTG
  

MA0267.1_ACE2

Match rank:  3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGCTGGCTG
TGCTGGT--
  

Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-Seq/Homer

Match rank:  4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGCTGGCTG-
GTCATGCHTGRCTGS
  

MA0402.1_SWI5

Match rank:  5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCTGGCTG
TGCTGGTT-