Detailed information for motif6

P-value:1e-16
ln P-value:-3.739e+01
Information content per bp:1.597
Number of target sequences with motif:210.0
Percentage of target sequences with motif:40.78%
Number of background sequences with motif:11765.0
Percentage of background sequences with motif:  24.12%
Average position of motif in targets:200.7 +/- 112.2bp
Average position of motif in background:199.2 +/- 123.8bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.37
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0401.1_SWI4

Match rank:  1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ATGCGAAA
ACGCGAAA
  

IRF2_f1_HM09

Match rank:  2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ATGCGAAA---
GGAAAGTGAAAGCA
  

MA0050.1_IRF1

Match rank:  3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGCGAAA--
GAAAGCGAAACC
  

IRF1_si_HM09

Match rank:  4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGCGAAA--
GAAAGTGAAAGT
  

POU5F1.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATGCGAAA
ATGCAAA-