Detailed information for motif4

P-value:1e-17
ln P-value:-3.989e+01
Information content per bp:1.747
Number of target sequences with motif:30.0
Percentage of target sequences with motif:5.80%
Number of background sequences with motif:348.0
Percentage of background sequences with motif:  0.71%
Average position of motif in targets:211.8 +/- 111.0bp
Average position of motif in background:210.1 +/- 119.7bp
Strand bias (log2 ratio + to - strand density):0.3
Multiplicity (# of sites on avg that occur together):  1.07
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match rank:  1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CAGCTCAGDCTGG
-----CTGTCTGG
  

PAX5_si_HM09

Match rank:  2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAGCTCAGDCTGG
--CCTCAGCC---
  

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match rank:  3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CAGCTCAGDCTGG
-----TWGTCTGV
  

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match rank:  4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGCTCAGDCTGG
---VBSYGTCTGG
  

SMAD3_f1_HM09

Match rank:  5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGCTCAGDCTGG--
-----GTGTCTGGCC