Detailed information for motif52

P-value:1e-24
ln P-value:-5.609e+01
Information content per bp:1.823
Number of target sequences with motif:689.0
Percentage of target sequences with motif:4.35%
Number of background sequences with motif:937.5
Percentage of background sequences with motif:  2.88%
Average position of motif in targets:310.7 +/- 219.8bp
Average position of motif in background:280.2 +/- 217.4bp
Strand bias (log2 ratio + to - strand density):-0.2
Multiplicity (# of sites on avg that occur together):  1.03
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

FOXN1.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GCGACGCTA-
AGNGACGCTNT
  

MA0295.1_FHL1

Match rank:  2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCGACGCTA-
--GACGCAAA
  

MA0396.1_STP3

Match rank:  3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GCGACGCTA--
--TGCGCTAGC
  

MA0397.1_STP4

Match rank:  4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCGACGCTA--
--TGCGCTATC
  

MA0384.1_SNT2

Match rank:  5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCGACGCTA---
-CGGCGCTACCA