Detailed information for motif43

P-value:1e-31
ln P-value:-7.195e+01
Information content per bp:1.764
Number of target sequences with motif:551.0
Percentage of target sequences with motif:3.48%
Number of background sequences with motif:661.1
Percentage of background sequences with motif:  2.03%
Average position of motif in targets:307.5 +/- 220.3bp
Average position of motif in background:271.5 +/- 212.1bp
Strand bias (log2 ratio + to - strand density):0.3
Multiplicity (# of sites on avg that occur together):  1.03
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

PB0055.1_Rfx4_1

Match rank:  1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CTCCATAGCAACGG-
TACCATAGCAACGGT
  

PB0056.1_Rfxdc2_1

Match rank:  2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CTCCATAGCAACGG-
CCGCATAGCAACGGA
  

PB0054.1_Rfx3_1

Match rank:  3
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----CTCCATAGCAACGG-----
TGTGACCCTTAGCAACCGATTAA
  

RFX3_f1_HM09

Match rank:  4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CTCCATAGCAACGG
TTACCATGGCAACN-
  

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  5
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CTCCATAGCAACGG
--SCCTAGCAACAG