Detailed information for motif28

P-value:1e-45
ln P-value:-1.050e+02
Information content per bp:1.712
Number of target sequences with motif:1810.0
Percentage of target sequences with motif:11.43%
Number of background sequences with motif:2653.2
Percentage of background sequences with motif:  8.16%
Average position of motif in targets:309.5 +/- 252.7bp
Average position of motif in background:268.3 +/- 205.4bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.04
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0412.1_UME6

Match rank:  1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GCGGCTATATAA
TCGGCGGCTAATT--
  

MA0108.1_TBP

Match rank:  2
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCGGCTATATAA-------
----GTATAAAAGGCGGGG
  

POL012.1_TATA-Box

Match rank:  3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCGGCTATATAA-------
----GTATAAAAGGCGGGG
  

MA0108.2_TBP

Match rank:  4
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCGGCTATATAA-------
----GTATAAAAGGCGGGG
  

TBP.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GCGGCTATATAA-------
----CTATAAAAGGNNNGG