Detailed information for motif13

P-value:1e-80
ln P-value:-1.855e+02
Information content per bp:1.721
Number of target sequences with motif:5811.0
Percentage of target sequences with motif:36.68%
Number of background sequences with motif:9636.8
Percentage of background sequences with motif:  29.63%
Average position of motif in targets:319.7 +/- 250.5bp
Average position of motif in background:270.5 +/- 218.0bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.26
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0365.1_RFX1

Match rank:  1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TMGCWAM-
TAGCAACC
  

PB0055.1_Rfx4_1

Match rank:  2
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----TMGCWAM---
TACCATAGCAACGGT
  

PB0056.1_Rfxdc2_1

Match rank:  3
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----TMGCWAM---
CCGCATAGCAACGGA
  

PB0054.1_Rfx3_1

Match rank:  4
Score:0.74
Offset:-9
Orientation:forward strand
Alignment:---------TMGCWAM-------
TGTGACCCTTAGCAACCGATTAA
  

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TMGCWAM--
SCCTAGCAACAG