Detailed information for motif6

P-value:1e-149
ln P-value:-3.446e+02
Information content per bp:1.906
Number of target sequences with motif:5639.0
Percentage of target sequences with motif:29.18%
Number of background sequences with motif:6201.2
Percentage of background sequences with motif:  21.20%
Average position of motif in targets:313.1 +/- 235.3bp
Average position of motif in background:261.9 +/- 201.2bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.13
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

POU5F1.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:ATGCGAA
ATGCAAA
  

MA0401.1_SWI4

Match rank:  2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATGCGAA-
ACGCGAAA
  

PO2F1_f1_HM09

Match rank:  3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ATGCGAA-
TATGCAAAT
  

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq/Homer

Match rank:  4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--ATGCGAA-
TTATGCAAAT
  

PO2F2_si_HM09

Match rank:  5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ATGCGAA-
TATGCAAAT