Detailed information for motif42

P-value:1e-34
ln P-value:-8.018e+01
Information content per bp:1.904
Number of target sequences with motif:1548.0
Percentage of target sequences with motif:8.01%
Number of background sequences with motif:1700.8
Percentage of background sequences with motif:  5.81%
Average position of motif in targets:324.2 +/- 244.5bp
Average position of motif in background:274.2 +/- 208.0bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.02
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0185.1_Deaf1

Match rank:  1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TTCGGGAT
TTCGGG--
  

MA0362.1_RDS2

Match rank:  2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTCGGGAT
CTCGGGG-
  

PB0024.1_Gcm1_1

Match rank:  3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTCGGGAT---
NNNNATGCGGGTNNNN
  

MA0401.1_SWI4

Match rank:  4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTCGGGAT
TTTCGCGT-
  

MA0292.1_ECM22

Match rank:  5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTCGGGAT
-TCCGGAN