Detailed information for motif40

P-value:1e-37
ln P-value:-8.654e+01
Information content per bp:1.533
Number of target sequences with motif:1901.0
Percentage of target sequences with motif:9.84%
Number of background sequences with motif:2137.2
Percentage of background sequences with motif:  7.31%
Average position of motif in targets:323.5 +/- 247.5bp
Average position of motif in background:277.4 +/- 214.1bp
Strand bias (log2 ratio + to - strand density):0.2
Multiplicity (# of sites on avg that occur together):  1.05
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0401.1_SWI4

Match rank:  1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCTAMGCGA--
---ACGCGAAA
  

MA0329.1_MBP1

Match rank:  2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCTAMGCGA-
---ACGCGTA
  

PB0179.1_Sp100_2

Match rank:  3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCTAMGCGA----
NNTTTANNCGACGNA
  

PB0161.1_Rxra_2

Match rank:  4
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TCTAMGCGA
NNNNCAACCTTCGNGA
  

MA0330.1_MBP1::SWI6

Match rank:  5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TCTAMGCGA
--AACGCGT