Detailed information for motif20

P-value:1e-78
ln P-value:-1.813e+02
Information content per bp:1.533
Number of target sequences with motif:6999.0
Percentage of target sequences with motif:36.22%
Number of background sequences with motif:8747.7
Percentage of background sequences with motif:  29.90%
Average position of motif in targets:322.4 +/- 253.6bp
Average position of motif in background:273.2 +/- 212.7bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.27
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

PH0107.1_Msx2

Match rank:  1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CGACGAATTA-----
GAAGACCAATTAGCGCT
  

PRRX1,2.p2.SwissRegulon.nucfreq

Match rank:  2
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CGACGAATTA
-----AATTA
  

MA0075.1_Prrx2

Match rank:  3
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CGACGAATTA
-----AATTA
  

MA0125.1_Nobox

Match rank:  4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CGACGAATTA
--ACCAATTA
  

NOBOX_si_HM09

Match rank:  5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGACGAATTA-
--ACCAATTAN