Michael Rehli • Dept. Internal Medicine III • University Hospital • F.-J.-Strauss Allee 11 • 93053 Regensburg
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UCSC Genome Browser Track Hubs


Track hubs are web-accessible directories of genomic data that can be viewed on the UCSC Genome Browser alongside native annotation tracks. Hubs are a useful tool for visualizing a large number of genome-wide data sets. For additional info please see the UCSC track hub user guide. The following hub adresses provide easy access to our NGS data and to some published data sets. (Clicking on either server option will automatically open the track.)

H3K4me1, H3K27ac, PU.1, C/EBPbeta, EGR2 for monocytes and macrophages (Pham et al. Blood 2012)
http://www.ag-rehli.de/TrackHubs/hub_MOMAC.txt (US server) (EU server)

H3K4me1, H3K4me3, H3K27ac, H3K27me3 for haematopoietic progenitor cells (Roadmap data)
http://www.ag-rehli.de/TrackHubs/hub_HPC_epi.txt (US server) (EU server)

BRG1 (Hu et al. 2011, Genome Res), CTCF (ENCODE), GABP (Yu et al 2011, Blood), PU.1 (Novershtern et al. 2011, Cell), Fli1, GATA2, RUNX1 (Beck et al. 2013, Blood) & DNase I hypersensitivity mapping (Roadmap data) for haematopoietic progenitor cells.
http://www.ag-rehli.de/TrackHubs/hub_HPC_TF.txt (US server) (EU server)

 
FANTOM5 data sets
 
HeliscopeCAGE, H3K27ac, and H3K4me1 for monocyte subpopulations (Schmidl et al. Blood 2014a)
http://www.ag-rehli.de/TrackHubs/hub_MOsub.txt (US server) (EU server)
 
HeliscopeCAGE, H3K27ac, and H3K4me1 as well as FOXP3, STAT5, ETS1 and RUNX1 ChIPs for T cell subpopulations (Schmidl et al. Blood 2014b)
http://www.ag-rehli.de/TrackHubs/hub_Tsub.txt (US server) (EU server)
 
HeliscopeCAGE, H3K27ac, and H3K4me1, and DNase I hypersensitivity data for major blood MNCs (Anderson, Gebhard et al. Nature 2014)
http://www.ag-rehli.de/TrackHubs/hub_MNC.txt (US server) (EU server)
 
HeliscopeCAGE for all hematopoietic cell types in the FANTOM5 atlas (Forrest et al. Nature 2014)
http://www.ag-rehli.de/TrackHubs/hub_CAGEblood.txt (US server) (EU server)