Detailed information for motif3

P-value:1e-15
ln P-value:-3.509e+01
Information content per bp:1.747
Number of target sequences with motif:14.0
Percentage of target sequences with motif:11.67%
Number of background sequences with motif:218.3
Percentage of background sequences with motif:  0.45%
Average position of motif in targets:229.1 +/- 85.0bp
Average position of motif in background:209.3 +/- 128.1bp
Strand bias (log2 ratio + to - strand density):-0.4
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

ENCODE UW.Motif.0072

Match rank:  1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:SAGGAAACCTCAC
-AGGAANNCTG--
  

MA0260.1_che-1

Match rank:  2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:SAGGAAACCTCAC
---GAAACC----
  

ENCODE UW.Motif.0356_novel

Match rank:  3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--SAGGAAACCTCAC
GNNNGGANNNCTCA-
  

ENCODE UW.Motif.0008

Match rank:  4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:SAGGAAACCTCAC
----AAACCACA-
  

ENCODE UW.Motif.0409_novel

Match rank:  5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--SAGGAAACCTCAC
ANGNNGAAANCT---