LoGo

Known motif enrichment results for CGI CAGE clusters -robust 180k set

Total target sequences = 19294
Total background sequences = 29440

Rank
Motif
Name
P-value
q-value
(Benjamini)
Enrichment
Motif File
PDF
1
Sp1(Zf)/Promoter/Homer1e-3990.00006317.0 (32.74%) targets
5785.0 (19.65%) backgr.
motif file (matrix) pdf
2
NFY(CCAAT)/Promoter/Homer1e-2860.00004103.0 (21.26%) targets
3536.2 (12.01%) backgr.
motif file (matrix) pdf
3
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer1e-2080.00005723.0 (29.66%) targets
5969.2 (20.28%) backgr.
motif file (matrix) pdf
4
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer1e-1860.00005596.0 (29.00%) targets
5941.0 (20.18%) backgr.
motif file (matrix) pdf
5
ETS(ETS)/Promoter/Homer1e-1800.00003327.0 (17.24%) targets
3063.4 (10.41%) backgr.
motif file (matrix) pdf
6
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-1790.00007064.0 (36.61%) targets
7995.8 (27.17%) backgr.
motif file (matrix) pdf
7
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer1e-1650.00004988.0 (25.85%) targets
5265.6 (17.89%) backgr.
motif file (matrix) pdf
8
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq/Homer1e-1470.00005379.0 (27.88%) targets
5915.7 (20.10%) backgr.
motif file (matrix) pdf
9
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-1380.000011987.0 (62.12%) targets
15644.9 (53.15%) backgr.
motif file (matrix) pdf
10
ETV1(ETS)/GIST48-ETV1-ChIP-Seq/Homer1e-1180.00006890.0 (35.71%) targets
8245.1 (28.01%) backgr.
motif file (matrix) pdf
11
NRF1/Promoter/Homer1e-1140.00002723.0 (14.11%) targets
2664.0 (9.05%) backgr.
motif file (matrix) pdf
12
GFY-Staf/Promoters/Homer1e-1120.0000871.0 (4.51%) targets
561.4 (1.91%) backgr.
motif file (matrix) pdf
13
NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer1e-1100.00002824.0 (14.64%) targets
2817.1 (9.57%) backgr.
motif file (matrix) pdf
14
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq/Homer1e-1020.00005291.0 (27.42%) targets
6152.6 (20.90%) backgr.
motif file (matrix) pdf
15
Klf4(Zf)/mES-Klf4-ChIP-Seq/Homer1e-1010.00003297.0 (17.09%) targets
3476.0 (11.81%) backgr.
motif file (matrix) pdf
16
GFY(?)/Promoter/Homer1e-860.0000825.0 (4.28%) targets
584.4 (1.99%) backgr.
motif file (matrix) pdf
17
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer1e-860.00002979.0 (15.44%) targets
3175.3 (10.79%) backgr.
motif file (matrix) pdf
18
CRE(bZIP)/Promoter/Homer1e-830.00001780.0 (9.22%) targets
1682.2 (5.72%) backgr.
motif file (matrix) pdf
19
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer1e-800.00002186.0 (11.33%) targets
2200.0 (7.47%) backgr.
motif file (matrix) pdf
20
ERG(ETS)/VCaP-ERG-ChIP-Seq/Homer1e-750.00006422.0 (33.28%) targets
8018.3 (27.24%) backgr.
motif file (matrix) pdf
21
YY1(Zf)/Promoter/Homer1e-650.0000910.0 (4.72%) targets
750.3 (2.55%) backgr.
motif file (matrix) pdf
22
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer1e-620.00005743.0 (29.76%) targets
7203.0 (24.47%) backgr.
motif file (matrix) pdf
23
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer1e-490.00001358.0 (7.04%) targets
1359.3 (4.62%) backgr.
motif file (matrix) pdf
24
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer1e-490.00005771.0 (29.91%) targets
7405.8 (25.16%) backgr.
motif file (matrix) pdf
25
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer1e-490.0000572.0 (2.96%) targets
439.4 (1.49%) backgr.
motif file (matrix) pdf
26
ATF3(bZIP)/K562-ATF3-ChIP-Seq/Homer1e-490.00001292.0 (6.70%) targets
1280.6 (4.35%) backgr.
motif file (matrix) pdf
27
TATA-Box(TBP)/Promoter/Homer1e-480.00002638.0 (13.67%) targets
3039.0 (10.32%) backgr.
motif file (matrix) pdf
28
E-box(HLH)/Promoter/Homer1e-460.0000826.0 (4.28%) targets
735.5 (2.50%) backgr.
motif file (matrix) pdf
29
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-450.00001226.0 (6.35%) targets
1225.6 (4.16%) backgr.
motif file (matrix) pdf
30
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer1e-440.00004254.0 (22.05%) targets
5317.6 (18.07%) backgr.
motif file (matrix) pdf
31
USF1(HLH)/GM12878-Usf1-ChIP-Seq/Homer1e-410.00002205.0 (11.43%) targets
2517.6 (8.55%) backgr.
motif file (matrix) pdf
32
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq/Homer1e-400.0000947.0 (4.91%) targets
914.0 (3.11%) backgr.
motif file (matrix) pdf
33
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq/Homer1e-360.00003749.0 (19.43%) targets
4699.0 (15.96%) backgr.
motif file (matrix) pdf
34
EGR(Zf)/K562-EGR1-ChIP-Seq/Homer1e-340.00002329.0 (12.07%) targets
2765.5 (9.40%) backgr.
motif file (matrix) pdf
35
RFX(HTH)/K562-RFX3-ChIP-Seq/Homer1e-330.0000739.0 (3.83%) targets
700.4 (2.38%) backgr.
motif file (matrix) pdf
36
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer1e-310.00002022.0 (10.48%) targets
2375.4 (8.07%) backgr.
motif file (matrix) pdf
37
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq/Homer1e-310.00003295.0 (17.08%) targets
4136.3 (14.05%) backgr.
motif file (matrix) pdf
38
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer1e-310.00001589.0 (8.23%) targets
1801.7 (6.12%) backgr.
motif file (matrix) pdf
39
PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer1e-290.00003750.0 (19.43%) targets
4806.1 (16.33%) backgr.
motif file (matrix) pdf
40
BORIS(Zf)/K562-CTCFL-ChIP-Seq/Homer1e-290.00002102.0 (10.89%) targets
2509.2 (8.52%) backgr.
motif file (matrix) pdf
41
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer1e-230.00007302.0 (37.84%) targets
10125.7 (34.40%) backgr.
motif file (matrix) pdf
42
Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer1e-220.0000983.0 (5.09%) targets
1085.2 (3.69%) backgr.
motif file (matrix) pdf
43
GFX(?)/Promoter/Homer1e-220.0000285.0 (1.48%) targets
229.6 (0.78%) backgr.
motif file (matrix) pdf
44
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer1e-210.00005984.0 (31.01%) targets
8196.8 (27.85%) backgr.
motif file (matrix) pdf
45
Nanog(Homeobox)/mES-Nanog-ChIP-Seq/Homer1e-210.00007957.0 (41.24%) targets
11142.3 (37.86%) backgr.
motif file (matrix) pdf
46
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer1e-210.00001702.0 (8.82%) targets
2058.9 (7.00%) backgr.
motif file (matrix) pdf
47
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq/Homer1e-200.0000567.0 (2.94%) targets
567.8 (1.93%) backgr.
motif file (matrix) pdf
48
X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer1e-200.0000511.0 (2.65%) targets
501.1 (1.70%) backgr.
motif file (matrix) pdf
49
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq/Homer1e-200.0000689.0 (3.57%) targets
723.7 (2.46%) backgr.
motif file (matrix) pdf
50
CTCF(Zf)/CD4+-CTCF-ChIP-Seq/Homer1e-200.0000814.0 (4.22%) targets
885.9 (3.01%) backgr.
motif file (matrix) pdf
51
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer1e-190.00001606.0 (8.32%) targets
1947.4 (6.62%) backgr.
motif file (matrix) pdf
52
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq/Homer1e-180.0000865.0 (4.48%) targets
961.5 (3.27%) backgr.
motif file (matrix) pdf
53
Lhx3(Homeobox)/Forebrain-p300-ChIP-Seq/Homer1e-180.00001438.0 (7.45%) targets
1727.8 (5.87%) backgr.
motif file (matrix) pdf
54
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer1e-170.0000270.0 (1.40%) targets
233.8 (0.79%) backgr.
motif file (matrix) pdf
55
Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer1e-160.00002049.0 (10.62%) targets
2608.9 (8.86%) backgr.
motif file (matrix) pdf
56
CEBP:AP1/ThioMac-CEBPb-ChIP-Seq/Homer1e-150.00001069.0 (5.54%) targets
1268.0 (4.31%) backgr.
motif file (matrix) pdf
57
HIF1b(HLH)/O785-HIF1b-ChIP-Seq(GSE34871)/Homer1e-140.0000866.0 (4.49%) targets
1001.6 (3.40%) backgr.
motif file (matrix) pdf
58
n-Myc(HLH)/mES-nMyc-ChIP-Seq/Homer1e-140.00002926.0 (15.16%) targets
3896.0 (13.24%) backgr.
motif file (matrix) pdf
59
Max(HLH)/K562-Max-ChIP-Seq/Homer1e-140.00002228.0 (11.55%) targets
2898.5 (9.85%) backgr.
motif file (matrix) pdf
60
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq/Homer1e-120.00001058.0 (5.48%) targets
1291.0 (4.39%) backgr.
motif file (matrix) pdf
61
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer1e-110.00001310.0 (6.79%) targets
1645.5 (5.59%) backgr.
motif file (matrix) pdf
62
CRX(Homeobox)/Retina-Crx-ChIP-Seq/Homer1e-110.00003834.0 (19.87%) targets
5271.2 (17.91%) backgr.
motif file (matrix) pdf
63
ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer1e-110.0000725.0 (3.76%) targets
847.5 (2.88%) backgr.
motif file (matrix) pdf
64
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer1e-110.00005511.0 (28.56%) targets
7762.9 (26.37%) backgr.
motif file (matrix) pdf
65
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer1e-100.0000794.0 (4.11%) targets
954.5 (3.24%) backgr.
motif file (matrix) pdf
66
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq/Homer1e-100.0000368.0 (1.91%) targets
392.5 (1.33%) backgr.
motif file (matrix) pdf
67
E2F(E2F)/Cell-Cycle-Exp/Homer1e-100.0000708.0 (3.67%) targets
844.7 (2.87%) backgr.
motif file (matrix) pdf
68
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq/Homer1e-90.0000561.0 (2.91%) targets
650.0 (2.21%) backgr.
motif file (matrix) pdf
69
Hoxc9/Ainv15-Hoxc9-ChIP-Seq/Homer1e-80.0000588.0 (3.05%) targets
705.6 (2.40%) backgr.
motif file (matrix) pdf
70
Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer1e-70.0000884.0 (4.58%) targets
1114.9 (3.79%) backgr.
motif file (matrix) pdf
71
Stat3+il23(Stat)/CD4-Stat3-ChIP-Seq/Homer1e-70.00002011.0 (10.42%) targets
2718.6 (9.24%) backgr.
motif file (matrix) pdf
72
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-70.0000587.0 (3.04%) targets
707.4 (2.40%) backgr.
motif file (matrix) pdf
73
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer1e-70.00005278.0 (27.35%) targets
7532.3 (25.59%) backgr.
motif file (matrix) pdf
74
CEBP(bZIP)/CEBPb-ChIP-Seq/Homer1e-70.0000935.0 (4.85%) targets
1190.0 (4.04%) backgr.
motif file (matrix) pdf
75
HOXA9/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer1e-70.0000759.0 (3.93%) targets
945.3 (3.21%) backgr.
motif file (matrix) pdf
76
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq/Homer1e-70.0000402.0 (2.08%) targets
468.3 (1.59%) backgr.
motif file (matrix) pdf
77
STAT4(Stat)/CD4-Stat4-ChIP-Seq/Homer1e-60.00001955.0 (10.13%) targets
2664.7 (9.05%) backgr.
motif file (matrix) pdf
78
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq/Homer1e-60.0000960.0 (4.98%) targets
1243.7 (4.23%) backgr.
motif file (matrix) pdf
79
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer1e-60.00001638.0 (8.49%) targets
2217.4 (7.53%) backgr.
motif file (matrix) pdf
80
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-60.0000883.0 (4.58%) targets
1140.4 (3.87%) backgr.
motif file (matrix) pdf
81
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq/Homer1e-60.00001226.0 (6.35%) targets
1628.8 (5.53%) backgr.
motif file (matrix) pdf
82
E2F1(E2F)/Hela-E2F1-ChIP-Seq/Hoemr1e-60.00003221.0 (16.69%) targets
4537.0 (15.41%) backgr.
motif file (matrix) pdf
83
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)1e-60.0000667.0 (3.46%) targets
843.2 (2.86%) backgr.
motif file (matrix) pdf
84
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-50.00001689.0 (8.75%) targets
2301.5 (7.82%) backgr.
motif file (matrix) pdf
85
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer1e-50.0000484.0 (2.51%) targets
596.4 (2.03%) backgr.
motif file (matrix) pdf
86
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer1e-50.0000920.0 (4.77%) targets
1211.8 (4.12%) backgr.
motif file (matrix) pdf
87
HRE(HSF)/HepG2-HSF1-ChIP-Seq/Homer1e-50.0000423.0 (2.19%) targets
520.8 (1.77%) backgr.
motif file (matrix) pdf
88
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer1e-40.00001351.0 (7.00%) targets
1839.0 (6.25%) backgr.
motif file (matrix) pdf
89
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer1e-40.00013649.0 (18.91%) targets
5233.4 (17.78%) backgr.
motif file (matrix) pdf
90
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-40.0001121.0 (0.63%) targets
125.9 (0.43%) backgr.
motif file (matrix) pdf
91
NFkB-p65-Rel(RHD)/LPS-exp/Homer1e-40.0002225.0 (1.17%) targets
263.4 (0.89%) backgr.
motif file (matrix) pdf
92
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer1e-40.0002998.0 (5.17%) targets
1350.1 (4.59%) backgr.
motif file (matrix) pdf
93
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer1e-40.000268.0 (0.35%) targets
63.1 (0.21%) backgr.
motif file (matrix) pdf
94
HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer1e-30.00021737.0 (9.00%) targets
2430.2 (8.26%) backgr.
motif file (matrix) pdf
95
ISRE(IRF)/ThioMac-LPS-exp/HOMER1e-30.0004155.0 (0.80%) targets
175.8 (0.60%) backgr.
motif file (matrix) pdf
96
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer1e-30.00044779.0 (24.77%) targets
6968.7 (23.68%) backgr.
motif file (matrix) pdf
97
STAT5(Stat)/mCD4+-Stat5a|b-ChIP-Seq/Homer1e-30.0005674.0 (3.49%) targets
897.5 (3.05%) backgr.
motif file (matrix) pdf
98
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer1e-30.0009122.0 (0.63%) targets
135.1 (0.46%) backgr.
motif file (matrix) pdf
99
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-30.00111170.0 (6.06%) targets
1623.7 (5.52%) backgr.
motif file (matrix) pdf
100
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq/Homer1e-30.0011620.0 (3.21%) targets
828.5 (2.81%) backgr.
motif file (matrix) pdf
101
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq/Homer1e-30.00131766.0 (9.15%) targets
2500.4 (8.50%) backgr.
motif file (matrix) pdf
102
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-ChIP-Seq/Homer1e-30.0013170.0 (0.88%) targets
200.1 (0.68%) backgr.
motif file (matrix) pdf
103
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer1e-30.0014449.0 (2.33%) targets
587.8 (2.00%) backgr.
motif file (matrix) pdf
104
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer1e-30.001575.0 (0.39%) targets
77.4 (0.26%) backgr.
motif file (matrix) pdf
105
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq/Homer1e-30.0018122.0 (0.63%) targets
138.1 (0.47%) backgr.
motif file (matrix) pdf
106
CHR/Cell-Cycle-Exp/Homer1e-30.0020877.0 (4.54%) targets
1205.2 (4.09%) backgr.
motif file (matrix) pdf
107
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer1e-20.00231523.0 (7.89%) targets
2152.2 (7.31%) backgr.
motif file (matrix) pdf
108
T1ISRE(IRF)/Ifnb-Exp/Homer1e-20.002424.0 (0.12%) targets
18.6 (0.06%) backgr.
motif file (matrix) pdf
109
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq/Homer1e-20.0025202.0 (1.05%) targets
247.2 (0.84%) backgr.
motif file (matrix) pdf
110
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-20.002620.0 (0.10%) targets
14.0 (0.05%) backgr.
motif file (matrix) pdf
111
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/1e-20.0038523.0 (2.71%) targets
702.7 (2.39%) backgr.
motif file (matrix) pdf
112
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq/Homer1e-20.0039450.0 (2.33%) targets
598.3 (2.03%) backgr.
motif file (matrix) pdf
113
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-20.00431770.0 (9.17%) targets
2529.2 (8.59%) backgr.
motif file (matrix) pdf
114
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer1e-20.0062867.0 (4.49%) targets
1206.3 (4.10%) backgr.
motif file (matrix) pdf
115
CArG(MADS)/PUER-Srf-ChIP-Seq/Homer1e-20.0105561.0 (2.91%) targets
768.2 (2.61%) backgr.
motif file (matrix) pdf
116
RUNX(Runt)/HPC7-Runx1-ChIP-Seq/Homer1e-20.01201450.0 (7.51%) targets
2075.7 (7.05%) backgr.
motif file (matrix) pdf
117
c-Myc/mES-cMyc-ChIP-Seq/Homer1e-20.01251690.0 (8.76%) targets
2432.2 (8.26%) backgr.
motif file (matrix) pdf
118
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-20.01652444.0 (12.67%) targets
3563.3 (12.11%) backgr.
motif file (matrix) pdf

 
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